Update:
First off I can't sleep at all. The basement sucks, I feel just as far from my wife as I did when I wasn't at the house. In the back of my mind I want to just go up stairs and just sleep in the room, in my Bed with out her permission. But, I know that won't help and I am trying to be courteous to her emotions.
Last night I left her alone while she worked and made the initiative to cook her dinner, As I always do even through this whole mess.
Then I went to the store I took her Nephews along, whom she basically has raised, due to there mom being a druggy. This last year or two I have shut my self off from her nephews, refusing to help with them because I was afraid to get attached to them, Why I don't know..maybe due to my past and my mom adopting terminally ill kids, me getting attached and them dying a year later. All in all I had fun with them...there good kids just have no fatherly guidance....I bought stuff for the house and some educational stuff to help the youngest, he is behind in school because of again his mother.
I came home, my wife was still doing work so I left her alone again. This time before I shut the door instead of telling her I loved her all I could get out was I Miss you....I saw her look back as I shut the door.
I went down to the basement and worked out a little, got to stay fit incase she wants me back...won't help with a little extra 20lbs

....
I came back up and tucked her in...I asked if she didn't mind if I laid with her until she fell asleep, she didn't. I shared some of my feelings and for the first time in weeks she reached over and gave me her hand...It felt amazing...but at the same time I almost broke down because I knew this was only the Beginning.
I laid there for what seemed like forever, laying close to her, listening to her breathe.
Then out of respect I headed downstairs. That night I couldn't sleep. Even with the Sleeping pill I had taken. I was up every other hour, its been like that for weeks now...that I don't really eat. I had weird dreams and checked on shelly through out the night.
I can only hope that things start to get a little better. I Love her but she needs to find what makes her Happy first.
If you guys have any advice on anything my actions or not let me know. Thanks for letting me vent.